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The exhaustive list of topics in Computational Genomics in which we provide Help with Homework Assignment and Help with Project is as follows:
  • Hidden Markov Models--Decoding & Evaluation
  • Biology Background
  • DNA Sequencing
  • Chaining Local Alignments; Multiple Sequence Alignment
  • Evolution and Phylogeny Tree Reconstruction
  • Evolution, Phylogeny, Some novel sequencing technologies
  • Comparative Genomics-based Gene Recognition, & Suffix Trees
  • Gene Regulation and Microarrays
  • Linear-Space Alignment
    • Four-Russian Algorithm
  • Regulatory Motif Finding
  • Sequence Alignment--Dynamic Programming
  • Gene Recognition
  • DNA Sequencing and Fragment Assembly
  • Motif Finding; Rapid Global Alignments
  • Indexing-based Local Alignment Techniques
  • Pair HMMs for Sequence Alignment
    • Learning: EM / Baum-Welch
    • Evaluation & Learning
  • Multiple Sequence Alignment
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