The exhaustive list of topics in High-Throughput Sequence Analysis Problems in which we provide Help with Homework Assignment and Help with Project is as follows:
- Work with Large Multi-Entry Text Files
- BioIndexedFile Object
- Source File
- Manage Short-Read Sequence Data in Objects
- Sequence Alignments
- BioMap Object
- Coverage of a Reference Sequence
- Filter Read Sequences Using SAM Flags
- Sequence and Quality Data in a BioRead
- Alignment/Mapping
- Store and Manage Feature Annotations in Objects
- Annotation Object
- Feature Annotations in a GFFAnnotation
- Feature Annotations with Short-Read Sequence
- Visualize and Investigate Short-Read Alignments
- Alignments of Multiple Data Sets
- NGS Browser
- Reference Sequence
- Feature Annotations
- Insertions and Deletions
- Location, Quality Scores, and Mapping
- Pileup View of Short Reads
- Specific Region of the Alignment
- Identifying Differentially Expressed Genes from
- RNA-Seq Data
- Exploring Protein-DNA Binding Sites from Paired-End
- ChIP-Seq Data
- Exploring Genome-wide Differences in DNA
- Methylation Profiles